1. A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor.

    Current Biology 25(5):613 (2015) PMID 25660540

    Gall-forming arthropods are highly specialized herbivores that, in combination with their hosts, produce extended phenotypes with unique morphologies [1]. Many are economically important, and others have improved our understanding of ecology and adaptive radiation [2]. However, the mechanisms th...
  2. A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor

    Current Biology (2014)

    • The plant galling Mayetiola destructor genome is replete with effector genes • The SSGP-71 effector gene family is the largest known arthropod gene family. ...
  3. Gibbon genome and the fast karyotype evolution of small apes.
    Lucia Carbone, R Alan Harris, Sante Gnerre, Krishna R Veeramah, Belen Lorente-Galdos, John Huddleston, Thomas J Meyer, Javier Herrero, Christian Roos, Bronwen Aken, Fabio Anaclerio, Nicoletta Archidiacono, Carl Baker, Daniel Barrell, Mark A Batzer, Kathryn Beal, Antoine Blancher, Craig L Bohrson, Markus Brameier, Michael S Campbell, Oronzo Capozzi, Claudio Casola, Giorgia Chiatante, Andrew Cree, Annette Damert, Pieter de Jong, Laura Dumas, Marcos Fernandez-Callejo, Paul Flicek, Nina V Fuchs, Ivo Gut, Marta Gut, Matthew W Hahn, Jessica Hernandez-Rodriguez, LaDeana W Hillier, Robert Hubley, Bianca Ianc, Zsuzsanna Izsvák, Nina G Jablonski, Laurel M Johnstone, Anis Karimpour-Fard, Miriam Konkel, Dennis Kostka, Nathan H Lazar, Sandra Lee, Lora R Lewis, Yue Liu, Devin P Locke, Swapan Mallick, Fernando L Mendez, Matthieu Muffato, Lynne V Nazareth, Kimberly A Nevonen, Majesta O'Bleness, Cornelia Ochis, Duncan T Odom, Katherine S Pollard, Javier Quilez, David Reich, Mariano Rocchi, Gerald Schumann, Stephen Searle, James M Sikela, Gabriella Skollar, Arian Smit, Kemal Sonmez, Boudewijn ten Hallers, Elizabeth Terhune, Gregg W C Thomas, Brygg Ullmer, Mario Ventura, Jerilyn A Walker, Jeffrey D Wall, Lutz Walter, Michelle C Ward, Sarah J Wheelan, Christopher Whelan, Simon White, Larry J Wilhelm, August E Woerner, Mark Yandell, Baoli Zhu, Michael F Hammer, Tomas Marques-Bonet, Evan Eichler, Lucinda Fulton, Catrina Fronick, Donna Muzny, Wesley C Warren, Kim C Worley, Jeffrey Rogers, Richard K Wilson, and Richard A Gibbs

    Nature 513(7517):195 (2014) PMID 25209798 PMCID PMC4249732

    Gibbons are small arboreal apes that display an accelerated rate of evolutionary chromosomal rearrangement and occupy a key node in the primate phylogeny between Old World monkeys and great apes. Here we present the assembly and analysis of a northern white-cheeked gibbon (Nomascus leucogenys) g...
  4. Gibbon genome and the fast karyotype evolution of small apes.
    Lucia Carbone, R Alan Harris, Sante Gnerre, Krishna R Veeramah, Belen Lorente-Galdos, John Huddleston, Thomas J Meyer, Javier Herrero, Christian Roos, Bronwen Aken, Fabio Anaclerio, Nicoletta Archidiacono, Carl Baker, Daniel Barrell, Mark A Batzer, Kathryn Beal, Antoine Blancher, Craig L Bohrson, Markus Brameier, Michael S Campbell, Oronzo Capozzi, Claudio Casola, Giorgia Chiatante, Andrew Cree, Annette Damert, Pieter de Jong, Laura Dumas, Marcos Fernandez-Callejo, Paul Flicek, Nina V Fuchs, Ivo Gut, Marta Gut, Matthew W Hahn, Jessica Hernandez-Rodriguez, LaDeana W Hillier, Robert Hubley, Bianca Ianc, Zsuzsanna Izsvák, Nina G Jablonski, Laurel M Johnstone, Anis Karimpour-Fard, Miriam Konkel, Dennis Kostka, Nathan H Lazar, Sandra Lee, Lora R Lewis, Yue Liu, Devin P Locke, Swapan Mallick, Fernando L Mendez, Matthieu Muffato, Lynne V Nazareth, Kimberly A Nevonen, Majesta O'Bleness, Cornelia Ochis, Duncan T Odom, Katherine S Pollard, Javier Quilez, David Reich, Mariano Rocchi, Gerald Schumann, Stephen Searle, James M Sikela, Gabriella Skollar, Arian Smit, Kemal Sonmez, Boudewijn ten Hallers, Elizabeth Terhune, Gregg W C Thomas, Brygg Ullmer, Mario Ventura, Jerilyn A Walker, Jeffrey D Wall, Lutz Walter, Michelle C Ward, Sarah J Wheelan, Christopher Whelan, Simon White, Larry J Wilhelm, August E Woerner, Mark Yandell, Baoli Zhu, Michael F Hammer, Tomas Marques-Bonet, Evan Eichler, Lucinda Fulton, Catrina Fronick, Donna Muzny, Wesley C Warren, Kim C Worley, Jeffrey Rogers, Richard K Wilson, and Richard A Gibbs

    Nature 513(7517):195 (2014) PMID 25209798 PMCID PMC4249732

    Gibbons are small arboreal apes that display an accelerated rate of evolutionary chromosomal rearrangement and occupy a key node in the primate phylogeny between Old World monkeys and great apes. Here we present the assembly and analysis of a northern white-cheeked gibbon (Nomascus leucogenys) g...
  5. Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes.

    Nature 483(7387):82 (2012) PMID 22367542 PMCID PMC3292678

    The human X and Y chromosomes evolved from an ordinary pair of autosomes during the past 200-300 million years. The human MSY (male-specific region of Y chromosome) retains only three percent of the ancestral autosomes' genes owing to genetic decay. This evolutionary decay was driven by a series...
  6. Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes.

    Nature 483(7387):82 (2012) PMID 22367542 PMCID PMC3292678

    The human X and Y chromosomes evolved from an ordinary pair of autosomes during the past 200-300 million years. The human MSY (male-specific region of Y chromosome) retains only three percent of the ancestral autosomes' genes owing to genetic decay. This evolutionary decay was driven by a series...
  7. A high-resolution map of human evolutionary constraint using 29 mammals.

    Nature 478(7370):476 (2011) PMID 21993624 PMCID PMC3207357

    The comparison of related genomes has emerged as a powerful lens for genome interpretation. Here we report the sequencing and comparative analysis of 29 eutherian genomes. We confirm that at least 5.5% of the human genome has undergone purifying selection, and locate constrained elements coverin...
  8. A high-resolution map of human evolutionary constraint using 29 mammals.

    Nature 478(7370):476 (2011) PMID 21993624 PMCID PMC3207357

    The comparison of related genomes has emerged as a powerful lens for genome interpretation. Here we report the sequencing and comparative analysis of 29 eutherian genomes. We confirm that at least 5.5% of the human genome has undergone purifying selection, and locate constrained elements coverin...
  9. Comparative and demographic analysis of orang-utan genomes.
    Devin P Locke, LaDeana W Hillier, Wesley C Warren, Kim C Worley, Lynne V Nazareth, Donna Muzny, Shiaw-Pyng Yang, Zhengyuan Wang, Asif T Chinwalla, Pat Minx, Makedonka Mitreva, Lisa Cook, Kim Delehaunty, Catrina Fronick, Heather Schmidt, Lucinda A Fulton, Robert S Fulton, Joanne O Nelson, Vincent Magrini, Craig Pohl, Tina A Graves, Chris Markovic, Andy Cree, Huyen Dinh, Jennifer Hume, Christie L Kovar, Gerald R Fowler, Gerton Lunter, Stephen Meader, Andreas Heger, Chris Ponting, Tomas Marques-Bonet, Can Alkan, Lin Chen, Ze Cheng, Jeffrey M Kidd, Evan Eichler, Simon White, Stephen Searle, Albert J Vilella, Yuan Chen, Paul Flicek, Jian Ma, Brian Raney, Bernard Suh, Richard Burhans, Javier Herrero, David Haussler, Rui Faria, Olga Fernando, Fleur Darré, Domènec Farré, Elodie Gazave, Meritxell Oliva, Arcadi Navarro, Roberta Roberto, Oronzo Capozzi, Nicoletta Archidiacono, Giuliano Della Valle, Stefania Purgato, Mariano Rocchi, Miriam Konkel, Jerilyn A Walker, Brygg Ullmer, Mark A Batzer, Arian F Smit, Robert Hubley, Claudio Casola, Daniel R Schrider, Matthew W Hahn, Victor Quesada, Xose S Puente, Gonzalo R Ordoñez, Carlos López-Otín, Tomas Vinar, Brona Brejova, Aakrosh Ratan, Robert S Harris, Webb Miller, Carolin Kosiol, Heather A Lawson, Vikas Taliwal, André L Martins, Adam Siepel, Arindam Roychoudhury, Xin Ma, Jeremiah Degenhardt, Carlos D Bustamante, Ryan N Gutenkunst, Thomas Mailund, Julien Y Dutheil, Asger Hobolth, Mikkel H Schierup, Oliver A Ryder, Yuko Yoshinaga, Pieter de Jong, George M Weinstock, Jeffrey Rogers, Elaine R Mardis, Richard A Gibbs, and Richard K Wilson

    Nature 469(7331):529 (2011) PMID 21270892 PMCID PMC3060778

    'Orang-utan' is derived from a Malay term meaning 'man of the forest' and aptly describes the southeast Asian great apes native to Sumatra and Borneo. The orang-utan species, Pongo abelii (Sumatran) and Pongo pygmaeus (Bornean), are the most phylogenetically distant great apes from humans, there...
  10. Comparative and demographic analysis of orang-utan genomes.
    Devin P Locke, LaDeana W Hillier, Wesley C Warren, Kim C Worley, Lynne V Nazareth, Donna Muzny, Shiaw-Pyng Yang, Zhengyuan Wang, Asif T Chinwalla, Pat Minx, Makedonka Mitreva, Lisa Cook, Kim Delehaunty, Catrina Fronick, Heather Schmidt, Lucinda A Fulton, Robert S Fulton, Joanne O Nelson, Vincent Magrini, Craig Pohl, Tina A Graves, Chris Markovic, Andy Cree, Huyen Dinh, Jennifer Hume, Christie L Kovar, Gerald R Fowler, Gerton Lunter, Stephen Meader, Andreas Heger, Chris Ponting, Tomas Marques-Bonet, Can Alkan, Lin Chen, Ze Cheng, Jeffrey M Kidd, Evan Eichler, Simon White, Stephen Searle, Albert J Vilella, Yuan Chen, Paul Flicek, Jian Ma, Brian Raney, Bernard Suh, Richard Burhans, Javier Herrero, David Haussler, Rui Faria, Olga Fernando, Fleur Darré, Domènec Farré, Elodie Gazave, Meritxell Oliva, Arcadi Navarro, Roberta Roberto, Oronzo Capozzi, Nicoletta Archidiacono, Giuliano Della Valle, Stefania Purgato, Mariano Rocchi, Miriam Konkel, Jerilyn A Walker, Brygg Ullmer, Mark A Batzer, Arian F Smit, Robert Hubley, Claudio Casola, Daniel R Schrider, Matthew W Hahn, Victor Quesada, Xose S Puente, Gonzalo R Ordoñez, Carlos López-Otín, Tomas Vinar, Brona Brejova, Aakrosh Ratan, Robert S Harris, Webb Miller, Carolin Kosiol, Heather A Lawson, Vikas Taliwal, André L Martins, Adam Siepel, Arindam Roychoudhury, Xin Ma, Jeremiah Degenhardt, Carlos D Bustamante, Ryan N Gutenkunst, Thomas Mailund, Julien Y Dutheil, Asger Hobolth, Mikkel H Schierup, Oliver A Ryder, Yuko Yoshinaga, Pieter de Jong, George M Weinstock, Jeffrey Rogers, Elaine R Mardis, Richard A Gibbs, and Richard K Wilson

    Nature 469(7331):529 (2011) PMID 21270892 PMCID PMC3060778

    'Orang-utan' is derived from a Malay term meaning 'man of the forest' and aptly describes the southeast Asian great apes native to Sumatra and Borneo. The orang-utan species, Pongo abelii (Sumatran) and Pongo pygmaeus (Bornean), are the most phylogenetically distant great apes from humans, there...
  11. Complete Khoisan and Bantu genomes from southern Africa.

    Nature 463(7283):943 (2010) PMID 20164927 PMCID PMC3890430

    The genetic structure of the indigenous hunter-gatherer peoples of southern Africa, the oldest known lineage of modern human, is important for understanding human diversity. Studies based on mitochondrial and small sets of nuclear markers have shown that these hunter-gatherers, known as Khoisan,...
  12. Complete Khoisan and Bantu genomes from southern Africa.

    Nature 463(7283):943 (2010) PMID 20164927 PMCID PMC3890430

    The genetic structure of the indigenous hunter-gatherer peoples of southern Africa, the oldest known lineage of modern human, is important for understanding human diversity. Studies based on mitochondrial and small sets of nuclear markers have shown that these hunter-gatherers, known as Khoisan,...
  13. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.
    John H Werren, Stephen Richards, Christopher A Desjardins, Oliver Niehuis, Jürgen Gadau, John K Colbourne, John H Werren, Stephen Richards, Christopher A Desjardins, Oliver Niehuis, Jürgen Gadau, John K Colbourne, Leo W Beukeboom, Claude Desplan, Christine G Elsik, Cornelis J P Grimmelikhuijzen, Paul Kitts, Jeremy A Lynch, Terence Murphy, Deodoro C S G Oliveira, Christopher D Smith, Louis van de Zande, Kim C Worley, Evgeny M Zdobnov, Maarten Aerts, Stefan Albert, Victor H Anaya, Juan M Anzola, Angel R Barchuk, Susanta K Behura, Agata N Bera, May R Berenbaum, Rinaldo C Bertossa, Márcia G Bitondi, Seth R Bordenstein, Peer Bork, Erich, Marleen Brunain, Giuseppe Cazzamali, Lesley Chaboub, Joseph Chacko, Dean Chavez, Christopher P Childers, Jeong-Hyeon Choi, Michael E Clark, Charles Claudianos, Rochelle A Clinton, Andrew G Cree, Alexandre S Cristino, Phat M Dang, Alistair C Darby, Dirk C de Graaf, Bart Devreese, Huyen Dinh, Rachel Edwards, Navin Elango, Eran Elhaik, Olga Ermolaeva, Jay D Evans, Sylvain Foret, Gerald R Fowler, Daniel Gerlach, Joshua D Gibson, Donald Gilbert, Dan Graur, Stefan Gründer, Darren E Hagen, Yi Han, Frank Hauser, Da Hultmark, Henry C Hunter, Gregory D Hurst, Shalini N Jhangian, Huaiyang Jiang, Reed M Johnson, Andrew K Jones, Thomas Junier, Tatsuhiko Kadowaki, Albert Kamping, Yuri Kapustin, Bobak Kechavarzi, Jaebum Kim, Jay Kim, Boris Kiryutin, Tosca Koevoets, Christie L Kovar, Evgenia V Kriventseva, Robert Kucharski, Heewook Lee, Sandra Lee, Kristin Lees, Lora R Lewis, David W Loehlin, John M Logsdon, Jacqueline A Lopez, Ryan J Lozado, Donna Maglott, Ryszard Maleszka, Anoop Mayampurath, Danielle J Mazur, Marcella A McClure, Andrew D Moore, Margaret B Morgan, Jean Muller, Monica C Munoz-Torres, Donna Muzny, Lynne V Nazareth, Susanne Neupert, Ngoc B Nguyen, Francis M Nunes, John G Oakeshott, Geoffrey Okwuonu, Bart A Pannebakker, Vikas R Pejaver, Zuogang Peng, Stephen C Pratt, Reinhard Predel, Pu, Hilary Ranson, Rhitoban Raychoudhury, Andreas Rechtsteiner, Justin T Reese, Jeffrey G Reid, Megan Riddle, Hugh M Robertson, Jeanne Romero-Severson, Miriam Rosenberg, Timothy B Sackton, David B Sattelle, Helge Schlüns, Thomas Schmitt, Martina Schneider, Andreas Schüler, Andrew M Schurko, David M Shuker, Zilá L P Simões, Saurabh Sinha, Zachary Smith, Victor Solovyev, Alexandre Souvorov, Andreas Springauf, Elisabeth Stafflinger, Deborah E Stage, Mario Stanke, Yoshiaki Tanaka, Arndt Telschow, Carol Trent, Selina Vattathil, Eveline C Verhulst, Lumi Viljakainen, Kevin Wanner, Robert M Waterhouse, James B Whitfield, Timothy E Wilkes, Michael Williamson, Judith H Willis, Florian Wolschin, Stefan Wyder, Takuji Yamada, Soojin V Yi, Courtney N Zecher, Lan Zhang, and Richard A Gibbs

    Science 327(5963):343 (2010) PMID 20075255 PMCID PMC2849982

    We report here genome sequences and comparative analyses of three closely related parasitoid wasps: Nasonia vitripennis, N. giraulti, and N. longicornis. Parasitoids are important regulators of arthropod populations, including major agricultural pests and disease vectors, and Nasonia is an emerg...
  14. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.
    John H Werren, Stephen Richards, Christopher A Desjardins, Oliver Niehuis, Jürgen Gadau, John K Colbourne, John H Werren, Stephen Richards, Christopher A Desjardins, Oliver Niehuis, Jürgen Gadau, John K Colbourne, Leo W Beukeboom, Claude Desplan, Christine G Elsik, Cornelis J P Grimmelikhuijzen, Paul Kitts, Jeremy A Lynch, Terence Murphy, Deodoro C S G Oliveira, Christopher D Smith, Louis van de Zande, Kim C Worley, Evgeny M Zdobnov, Maarten Aerts, Stefan Albert, Victor H Anaya, Juan M Anzola, Angel R Barchuk, Susanta K Behura, Agata N Bera, May R Berenbaum, Rinaldo C Bertossa, Márcia G Bitondi, Seth R Bordenstein, Peer Bork, Erich, Marleen Brunain, Giuseppe Cazzamali, Lesley Chaboub, Joseph Chacko, Dean Chavez, Christopher P Childers, Jeong-Hyeon Choi, Michael E Clark, Charles Claudianos, Rochelle A Clinton, Andrew G Cree, Alexandre S Cristino, Phat M Dang, Alistair C Darby, Dirk C de Graaf, Bart Devreese, Huyen Dinh, Rachel Edwards, Navin Elango, Eran Elhaik, Olga Ermolaeva, Jay D Evans, Sylvain Foret, Gerald R Fowler, Daniel Gerlach, Joshua D Gibson, Donald Gilbert, Dan Graur, Stefan Gründer, Darren E Hagen, Yi Han, Frank Hauser, Da Hultmark, Henry C Hunter, Gregory D Hurst, Shalini N Jhangian, Huaiyang Jiang, Reed M Johnson, Andrew K Jones, Thomas Junier, Tatsuhiko Kadowaki, Albert Kamping, Yuri Kapustin, Bobak Kechavarzi, Jaebum Kim, Jay Kim, Boris Kiryutin, Tosca Koevoets, Christie L Kovar, Evgenia V Kriventseva, Robert Kucharski, Heewook Lee, Sandra Lee, Kristin Lees, Lora R Lewis, David W Loehlin, John M Logsdon, Jacqueline A Lopez, Ryan J Lozado, Donna Maglott, Ryszard Maleszka, Anoop Mayampurath, Danielle J Mazur, Marcella A McClure, Andrew D Moore, Margaret B Morgan, Jean Muller, Monica C Munoz-Torres, Donna Muzny, Lynne V Nazareth, Susanne Neupert, Ngoc B Nguyen, Francis M Nunes, John G Oakeshott, Geoffrey Okwuonu, Bart A Pannebakker, Vikas R Pejaver, Zuogang Peng, Stephen C Pratt, Reinhard Predel, Pu, Hilary Ranson, Rhitoban Raychoudhury, Andreas Rechtsteiner, Justin T Reese, Jeffrey G Reid, Megan Riddle, Hugh M Robertson, Jeanne Romero-Severson, Miriam Rosenberg, Timothy B Sackton, David B Sattelle, Helge Schlüns, Thomas Schmitt, Martina Schneider, Andreas Schüler, Andrew M Schurko, David M Shuker, Zilá L P Simões, Saurabh Sinha, Zachary Smith, Victor Solovyev, Alexandre Souvorov, Andreas Springauf, Elisabeth Stafflinger, Deborah E Stage, Mario Stanke, Yoshiaki Tanaka, Arndt Telschow, Carol Trent, Selina Vattathil, Eveline C Verhulst, Lumi Viljakainen, Kevin Wanner, Robert M Waterhouse, James B Whitfield, Timothy E Wilkes, Michael Williamson, Judith H Willis, Florian Wolschin, Stefan Wyder, Takuji Yamada, Soojin V Yi, Courtney N Zecher, Lan Zhang, and Richard A Gibbs

    Science 327(5963):343 (2010) PMID 20075255 PMCID PMC2849982

    We report here genome sequences and comparative analyses of three closely related parasitoid wasps: Nasonia vitripennis, N. giraulti, and N. longicornis. Parasitoids are important regulators of arthropod populations, including major agricultural pests and disease vectors, and Nasonia is an emerg...
  15. A collagen-binding adhesin, Acb, and ten other putative MSCRAMM and pilus family proteins of Streptococcus gallolyticus subsp. gallolyticus (Streptococcus bovis Group, biotype I).

    Journal of Bacteriology 191(21):6643 (2009) PMID 19717590 PMCID PMC2795296

    Members of the Streptococcus bovis group are important causes of endocarditis. However, factors associated with their pathogenicity, such as adhesins, remain uncharacterized. We recently demonstrated that endocarditis-derived Streptococcus gallolyticus subsp. gallolyticus isolates frequently adh...
  16. A collagen-binding adhesin, Acb, and ten other putative MSCRAMM and pilus family proteins of Streptococcus gallolyticus subsp. gallolyticus (Streptococcus bovis Group, biotype I).

    Journal of Bacteriology 191(21):6643 (2009) PMID 19717590 PMCID PMC2795296

    Members of the Streptococcus bovis group are important causes of endocarditis. However, factors associated with their pathogenicity, such as adhesins, remain uncharacterized. We recently demonstrated that endocarditis-derived Streptococcus gallolyticus subsp. gallolyticus isolates frequently adh...
  17. The genome sequence of taurine cattle: a window to ruminant biology and evolution.
    Christine G Elsik, Ross L Tellam, Kim C Worley, Richard A Gibbs, Donna Muzny, George M Weinstock, David L Adelson, Evan Eichler, Laura Elnitski, Roderic Guigó, Debora L Hamernik, Steve M Kappes, Harris A Lewin, David J Lynn, Frank W Nicholas, Alexandre Reymond, Monique Rijnkels, Loren C Skow, Evgeny M Zdobnov, Lawrence Schook, James Womack, Tyler Alioto, Stylianos E Antonarakis, Alex Astashyn, Charles E Chapple, Hsiu-Chuan Chen, Jacqueline Chrast, Francisco Câmara, Olga Ermolaeva, Charlotte N Henrichsen, Wratko Hlavina, Yuri Kapustin, Boris Kiryutin, Paul Kitts, Felix Kokocinski, Melissa Landrum, Donna Maglott, Kim Pruitt, Victor Sapojnikov, Stephen M Searle, Victor Solovyev, Alexandre Souvorov, Catherine Ucla, Carine Wyss, Juan M Anzola, Daniel Gerlach, Eran Elhaik, Dan Graur, Justin T Reese, Robert C Edgar, John C McEwan, Gemma M Payne, Joy M Raison, Thomas Junier, Evgenia V Kriventseva, Eduardo Eyras, Mireya Plass, Ravikiran Donthu, Denis M Larkin, James Reecy, Mary Q Yang, Lin Chen, Ze Cheng, Carol G Chitko-McKown, George E Liu, Lakshmi K Matukumalli, Jiuzhou Song, Bin Zhu, Daniel G Bradley, Fiona S L Brinkman, Lilian P Lau, Matthew D Whiteside, Angela Walker, Thomas Wheeler, Theresa Casey, J Bruce German, Danielle G Lemay, Nauman J Maqbool, Adrian J Molenaar, Seongwon Seo, Paul Stothard, Cynthia L Baldwin, Rebecca Baxter, Candice L Brinkmeyer-Langford, Wendy C Brown, Christopher P Childers, Timothy Connelley, Shirley A Ellis, Krista Fritz, Elizabeth J Glass, Carolyn T A Herzig, Antti Iivanainen, Kevin Lahmers, Anna K Bennett, C Michael Dickens, James R Gilbert, Darren E Hagen, Hanni Salih, Jan Aerts, Alexandre R Caetano, Brian Dalrymple, Jose Fernando Garcia, Clare A Gill, Stefan G Hiendleder, Erdogan Memili, Diane Spurlock, John L Williams, Lee Alexander, Michael J Brownstein, Leluo Guan, Robert A Holt, Steven M Jones, Marco A Marra, Richard Moore, Stephen Moore, Andy Roberts, Masaaki Taniguchi, Richard C Waterman, Joseph Chacko, Mimi Chandrabose, Andy Cree, Marvin Diep Dao, Huyen Dinh, Ramatu Ayiesha Gabisi, Sandra Hines, Jennifer Hume, Shalini N Jhangiani, Vandita Joshi, Christie L Kovar, Lora R Lewis, Yih-Shin Liu, John Lopez, Margaret B Morgan, Ngoc Bich Nguyen, Geoffrey Okwuonu, San Juana Ruiz, Jireh Santibanez, Rita A Wright, Christian Buhay, Yan Ding, Shannon Dugan-Rocha, Judith Herdandez, Michael Holder, Aniko Sabo, Amy Egan, Jason Goodell, Katarzyna Wilczek-Boney, Gerald R Fowler, Matthew Edward Hitchens, Ryan J Lozado, Charles Moen, David Steffen, James T Warren, Jingkun Zhang, Readman Chiu, Jacqueline E Schein, K James Durbin, Paul Havlak, Huaiyang Jiang, Yue Liu, Xiang Qin, Yanru Ren, Yufeng Shen, Henry Song, Stephanie Nicole Bell, Clay Davis, Angela Jolivet Johnson, Sandra Lee, Lynne V Nazareth, Bella Mayurkumar Patel, Pu, Selina Vattathil, Rex Lee Williams, Stacey Curry, Cerissa Hamilton, Erica Sodergren, David A Wheeler, Wes Barris, Gary L Bennett, André Eggen, Ronnie D Green, Gregory P Harhay, Matthew Hobbs, Oliver Jann, John W Keele, Matthew P Kent, Sigbjørn Lien, Stephanie D McKay, Sean McWilliam, Abhirami Ratnakumar, Robert D Schnabel, Timothy Smith, Warren M Snelling, Tad Sonstegard, Roger T Stone, Yoshikazu Sugimoto, Akiko Takasuga, Jeremy F Taylor, Curtis P Van Tassell, Michael D Macneil, Antonio R Abatepaulo, Colette Abbey, Virpi Ahola, Iassudara G Almeida, Ariel F Amadio, Elen Anatriello, Suria M Bahadue, Fernando H Biase, Clayton R Boldt, Jeffery A Carroll, Wanessa A Carvalho, Eliane P Cervelatti, Elsa Chacko, Jennifer E Chapin, Ye Cheng, Jungwoo Choi, Adam J Colley, Tatiana A de Campos, Marcos De Donato, Isabel K F de Miranda Santos, Carlo J F de Oliveira, Heather Deobald, Eve Devinoy, Kaitlin E Donohue, Peter Dovc, Annett Eberlein, Carolyn J Fitzsimmons, Alessandra M Franzin, Gustavo R Garcia, Sem Genini, Cody J Gladney, Jason R Grant, Marion L Greaser, Jonathan A Green, Darryl L Hadsell, Hatam A Hakimov, Rob Halgren, Jennifer L Harrow, Elizabeth A Hart, Nicola Hastings, Marta Hernandez, Zhi-Liang Hu, Aaron Ingham, Terhi Iso-Touru, Catherine Jamis, Kirsty Jensen, Dimos Kapetis, Tovah Kerr, Sari Khalil, Hasan Khatib, Davood Kolbehdari, Charu G Kumar, Dinesh Kumar, Richard Leach, Justin C-M Lee, Changxi Li, Krystin M Logan, Roberto Malinverni, Elisa Marques, William F Martin, Natalia F Martins, Sandra R Maruyama, Raffaele Mazza, Kim L McLean, Juan F Medrano, Barbara T Moreno, Daniela Moré, Carl T Muntean, Hari P Nandakumar, Marcelo F G Nogueira, Ingrid Olsaker, Sameer D Pant, Francesca Panzitta, Rosemeire C Pastor, Mario A Poli, Nathan Poslusny, Satyanarayana Rachagani, Shoba Ranganathan, Andrej Razpet, Penny K Riggs, Gonzalo Rincon, Nelida Rodriguez-Osorio, Sandra L Rodriguez-Zas, Natasha E Romero, Anne Rosenwald, Lillian Sando, Sheila M Schmutz, Libing Shen, Laura Sherman, Bruce R Southey, Ylva Strandberg Lutzow, Jonathan V Sweedler, Imke Tammen, Bhanu Prakash V L Telugu, Jennifer M Urbanski, Yuri T Utsunomiya, Chris P Verschoor, Ashley J Waardenberg, Zhiquan Wang, Robert Ward, Rosemarie Weikard, Thomas H Welsh, Stephen N White, Laurens G Wilming, Kris R Wunderlich, Jianqi Yang, and Feng-Qi Zhao

    Science 324(5926):522 (2009) PMID 19390049 PMCID PMC2943200

    To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set of 14,345 orthologs shared among seven mammalian species of which 1217 are absent or undetected in noneutherian...
  18. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.

    Science 324(5926):528 (2009) PMID 19390050 PMCID PMC2735092

    The imprints of domestication and breed development on the genomes of livestock likely differ from those of companion animals. A deep draft sequence assembly of shotgun reads from a single Hereford female and comparative sequences sampled from six additional breeds were used to develop probes to...
  19. The genome sequence of taurine cattle: a window to ruminant biology and evolution.
    Christine G Elsik, Ross L Tellam, Kim C Worley, Richard A Gibbs, Donna Muzny, George M Weinstock, David L Adelson, Evan Eichler, Laura Elnitski, Roderic Guigó, Debora L Hamernik, Steve M Kappes, Harris A Lewin, David J Lynn, Frank W Nicholas, Alexandre Reymond, Monique Rijnkels, Loren C Skow, Evgeny M Zdobnov, Lawrence Schook, James Womack, Tyler Alioto, Stylianos E Antonarakis, Alex Astashyn, Charles E Chapple, Hsiu-Chuan Chen, Jacqueline Chrast, Francisco Câmara, Olga Ermolaeva, Charlotte N Henrichsen, Wratko Hlavina, Yuri Kapustin, Boris Kiryutin, Paul Kitts, Felix Kokocinski, Melissa Landrum, Donna Maglott, Kim Pruitt, Victor Sapojnikov, Stephen M Searle, Victor Solovyev, Alexandre Souvorov, Catherine Ucla, Carine Wyss, Juan M Anzola, Daniel Gerlach, Eran Elhaik, Dan Graur, Justin T Reese, Robert C Edgar, John C McEwan, Gemma M Payne, Joy M Raison, Thomas Junier, Evgenia V Kriventseva, Eduardo Eyras, Mireya Plass, Ravikiran Donthu, Denis M Larkin, James Reecy, Mary Q Yang, Lin Chen, Ze Cheng, Carol G Chitko-McKown, George E Liu, Lakshmi K Matukumalli, Jiuzhou Song, Bin Zhu, Daniel G Bradley, Fiona S L Brinkman, Lilian P Lau, Matthew D Whiteside, Angela Walker, Thomas Wheeler, Theresa Casey, J Bruce German, Danielle G Lemay, Nauman J Maqbool, Adrian J Molenaar, Seongwon Seo, Paul Stothard, Cynthia L Baldwin, Rebecca Baxter, Candice L Brinkmeyer-Langford, Wendy C Brown, Christopher P Childers, Timothy Connelley, Shirley A Ellis, Krista Fritz, Elizabeth J Glass, Carolyn T A Herzig, Antti Iivanainen, Kevin Lahmers, Anna K Bennett, C Michael Dickens, James R Gilbert, Darren E Hagen, Hanni Salih, Jan Aerts, Alexandre R Caetano, Brian Dalrymple, Jose Fernando Garcia, Clare A Gill, Stefan G Hiendleder, Erdogan Memili, Diane Spurlock, John L Williams, Lee Alexander, Michael J Brownstein, Leluo Guan, Robert A Holt, Steven M Jones, Marco A Marra, Richard Moore, Stephen Moore, Andy Roberts, Masaaki Taniguchi, Richard C Waterman, Joseph Chacko, Mimi Chandrabose, Andy Cree, Marvin Diep Dao, Huyen Dinh, Ramatu Ayiesha Gabisi, Sandra Hines, Jennifer Hume, Shalini N Jhangiani, Vandita Joshi, Christie L Kovar, Lora R Lewis, Yih-Shin Liu, John Lopez, Margaret B Morgan, Ngoc Bich Nguyen, Geoffrey Okwuonu, San Juana Ruiz, Jireh Santibanez, Rita A Wright, Christian Buhay, Yan Ding, Shannon Dugan-Rocha, Judith Herdandez, Michael Holder, Aniko Sabo, Amy Egan, Jason Goodell, Katarzyna Wilczek-Boney, Gerald R Fowler, Matthew Edward Hitchens, Ryan J Lozado, Charles Moen, David Steffen, James T Warren, Jingkun Zhang, Readman Chiu, Jacqueline E Schein, K James Durbin, Paul Havlak, Huaiyang Jiang, Yue Liu, Xiang Qin, Yanru Ren, Yufeng Shen, Henry Song, Stephanie Nicole Bell, Clay Davis, Angela Jolivet Johnson, Sandra Lee, Lynne V Nazareth, Bella Mayurkumar Patel, Pu, Selina Vattathil, Rex Lee Williams, Stacey Curry, Cerissa Hamilton, Erica Sodergren, David A Wheeler, Wes Barris, Gary L Bennett, André Eggen, Ronnie D Green, Gregory P Harhay, Matthew Hobbs, Oliver Jann, John W Keele, Matthew P Kent, Sigbjørn Lien, Stephanie D McKay, Sean McWilliam, Abhirami Ratnakumar, Robert D Schnabel, Timothy Smith, Warren M Snelling, Tad Sonstegard, Roger T Stone, Yoshikazu Sugimoto, Akiko Takasuga, Jeremy F Taylor, Curtis P Van Tassell, Michael D Macneil, Antonio R Abatepaulo, Colette Abbey, Virpi Ahola, Iassudara G Almeida, Ariel F Amadio, Elen Anatriello, Suria M Bahadue, Fernando H Biase, Clayton R Boldt, Jeffery A Carroll, Wanessa A Carvalho, Eliane P Cervelatti, Elsa Chacko, Jennifer E Chapin, Ye Cheng, Jungwoo Choi, Adam J Colley, Tatiana A de Campos, Marcos De Donato, Isabel K F de Miranda Santos, Carlo J F de Oliveira, Heather Deobald, Eve Devinoy, Kaitlin E Donohue, Peter Dovc, Annett Eberlein, Carolyn J Fitzsimmons, Alessandra M Franzin, Gustavo R Garcia, Sem Genini, Cody J Gladney, Jason R Grant, Marion L Greaser, Jonathan A Green, Darryl L Hadsell, Hatam A Hakimov, Rob Halgren, Jennifer L Harrow, Elizabeth A Hart, Nicola Hastings, Marta Hernandez, Zhi-Liang Hu, Aaron Ingham, Terhi Iso-Touru, Catherine Jamis, Kirsty Jensen, Dimos Kapetis, Tovah Kerr, Sari Khalil, Hasan Khatib, Davood Kolbehdari, Charu G Kumar, Dinesh Kumar, Richard Leach, Justin C-M Lee, Changxi Li, Krystin M Logan, Roberto Malinverni, Elisa Marques, William F Martin, Natalia F Martins, Sandra R Maruyama, Raffaele Mazza, Kim L McLean, Juan F Medrano, Barbara T Moreno, Daniela Moré, Carl T Muntean, Hari P Nandakumar, Marcelo F G Nogueira, Ingrid Olsaker, Sameer D Pant, Francesca Panzitta, Rosemeire C Pastor, Mario A Poli, Nathan Poslusny, Satyanarayana Rachagani, Shoba Ranganathan, Andrej Razpet, Penny K Riggs, Gonzalo Rincon, Nelida Rodriguez-Osorio, Sandra L Rodriguez-Zas, Natasha E Romero, Anne Rosenwald, Lillian Sando, Sheila M Schmutz, Libing Shen, Laura Sherman, Bruce R Southey, Ylva Strandberg Lutzow, Jonathan V Sweedler, Imke Tammen, Bhanu Prakash V L Telugu, Jennifer M Urbanski, Yuri T Utsunomiya, Chris P Verschoor, Ashley J Waardenberg, Zhiquan Wang, Robert Ward, Rosemarie Weikard, Thomas H Welsh, Stephen N White, Laurens G Wilming, Kris R Wunderlich, Jianqi Yang, and Feng-Qi Zhao

    Science 324(5926):522 (2009) PMID 19390049 PMCID PMC2943200

    To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set of 14,345 orthologs shared among seven mammalian species of which 1217 are absent or undetected in noneutherian...
  20. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.

    Science 324(5926):528 (2009) PMID 19390050 PMCID PMC2735092

    The imprints of domestication and breed development on the genomes of livestock likely differ from those of companion animals. A deep draft sequence assembly of shotgun reads from a single Hereford female and comparative sequences sampled from six additional breeds were used to develop probes to...